pyrovelocity - conda-forge

/
channels
/
conda-forge
/
pyrovelocity

conda-forge

public

33.2k Packages

A community led collection of recipes, build infrastructure and distributions for the conda package manager.

pyrovelocity

v0.4.5

Probabilistic modeling of RNA Velocity with pyro.

Install with Pixi

pixi add pyrovelocity

Install with conda

conda install -c https://prefix.dev/conda-forge pyrovelocity

Description

Pyrovelocity is a library for probabilistic inference in minimal models approximating gene expression dynamics from multimodal single-cell sequencing data.

docs: https://docs.pyrovelocity.net
source: https://github.com/pinellolab/pyrovelocity

PyPI: https://pypi.org/project/pyrovelocity

Download counts

Loading chart data...

Version

0.4.5

License

AGPL-3.0-only

Platforms

noarch

Last Published

a year ago

Open Pull Requests

No Open Pull Requests

Show hidden

entries per page

Variants			Build	Created	Size
pyrovelocity-0.4.5-pyh5352f0f_0.conda	0.4.5	noarch	pyh5352f0f_0 (0)	a year ago	786.79 KB
Dependencies: adjusttext >=1.1.1 altair >=5.3.0 anndata >=0.10.5 anyio >=4.3.0 appdirs >=1.4.4 arviz >=0.17.1 astropy-base >=6.1.2 beartype >=0.18.5,<0.20.0 click >=8.1.7 colorlog >=6.7.0 daft >=0.1.2 dataclasses-json >=0.5.7 diffrax >=0.5.0 dill >=0.3.8 diskcache >=5.6.1 duckdb >=1.0.0 dulwich >=0.21.7 einops >=0.7.0 expression >=5.0.2 flax >=0.8.1 flytekit >=1.13.3 fsspec >=2024.3.0 google-api-python-client >=2.138.0 google-cloud-storage >=2.18.0 greenlet >=3.0.3 h5py >=3.9.0 httpx >=0.27.0 hydra-core >=1.3.2 hydra-zen >=0.13.0 ibis-duckdb >=9.2.0 ipywidgets >=8.1.3 jax >=0.4.23,<0.4.27 jaxlib >=0.4.23,<0.4.27 jaxtyping >=0.2.25 jupytext >=1.16.3 leidenalg >=0.9.1 lightning >=2.0.0 mashumaro >=3.13.1 matplotlib-base >=3.9.1 mlflow >=2.13.0 nbconvert >=7.16.4 nbformat >=5.10.4 numpyro >=0.15.0 omegaconf >=2.3.0 pandas >=2.0.0 papermill >=2.6.0 pillow >=10.1.0 plumbum >=1.8.2 polars >=0.20.17 pyarrow >=14.0.2 pyperclip >=1.9.0 pyro-ppl >=1.9.1 python python >=3.11,<3.12 python-dotenv >=1.0.1 pytorch >=2.1.2 pyyaml >=6.0.1 returns >=0.22.0 rich >=13.7.1 rich-click >=1.8.3 scanpy >=1.10.1 scikit-learn <1.2.0 scipy >=1.10.1,<1.14.0 scvelo >=0.3.1,<0.3.3 scvi-tools >=1.1.1,<1.2.0 seaborn >=0.13.2 sparse >=0.15.4,<0.16.0 statsmodels >=0.14.2 sympy >=1.12 termcolor >=2.2.0 tiledb-py >=0.31.1 torchmetrics >=1.2.1 trio >=0.26.0 validators >=0.33.0 vegafusion >=1.6.9 vegafusion-python-embed >=1.6.9 vl-convert-python >=1.6.0 zstandard >=0.23.0 Provenance: Built from: conda-forge/pyrovelocity-feedstock@048b53d Not cryptographically verified
pyrovelocity-0.4.4-pyh5352f0f_0.conda	0.4.4	noarch	pyh5352f0f_0 (0)	a year ago	556.46 KB
Dependencies: adjusttext >=1.1.1 altair >=5.3.0 anndata >=0.10.5 anyio >=4.3.0 appdirs >=1.4.4 arviz >=0.17.1 astropy-base >=6.1.2 beartype >=0.18.5,<0.20.0 click >=8.1.7 colorlog >=6.7.0 daft >=0.1.2 dataclasses-json >=0.5.7 diffrax >=0.5.0 dill >=0.3.8 diskcache >=5.6.1 duckdb >=1.0.0 dulwich >=0.21.7 einops >=0.7.0 expression >=5.0.2 flax >=0.8.1 flytekit >=1.13.3 fsspec >=2024.3.0 google-api-python-client >=2.138.0 google-cloud-storage >=2.18.0 greenlet >=3.0.3 h5py >=3.9.0 httpx >=0.27.0 hydra-core >=1.3.2 hydra-zen >=0.13.0 ibis-duckdb >=9.2.0 ipywidgets >=8.1.3 jax >=0.4.23,<0.4.27 jaxlib >=0.4.23,<0.4.27 jaxtyping >=0.2.25 jupytext >=1.16.3 leidenalg >=0.9.1 lightning >=2.0.0 mashumaro >=3.13.1 matplotlib-base >=3.9.1 mlflow >=2.13.0 nbconvert >=7.16.4 nbformat >=5.10.4 numpyro >=0.15.0 omegaconf >=2.3.0 pandas >=2.0.0 papermill >=2.6.0 pillow >=10.1.0 plumbum >=1.8.2 polars >=0.20.17 pyarrow >=14.0.2 pyperclip >=1.9.0 pyro-ppl >=1.9.1 python python >=3.11,<3.12 python-dotenv >=1.0.1 pytorch >=2.1.2 pyyaml >=6.0.1 returns >=0.22.0 rich >=13.7.1 rich-click >=1.8.3 scanpy >=1.10.1 scikit-learn <1.2.0 scipy >=1.10.1,<1.14.0 scvelo >=0.3.1,<0.3.3 scvi-tools >=1.1.1,<1.2.0 seaborn >=0.13.2 sparse >=0.15.4,<0.16.0 statsmodels >=0.14.2 sympy >=1.12 termcolor >=2.2.0 tiledb-py >=0.31.1 torchmetrics >=1.2.1 trio >=0.26.0 validators >=0.33.0 vegafusion >=1.6.9 vegafusion-python-embed >=1.6.9 vl-convert-python >=1.6.0 zstandard >=0.23.0 Provenance: Built from: conda-forge/pyrovelocity-feedstock@6690d3a Not cryptographically verified
pyrovelocity-0.4.3-pyh5352f0f_0.conda	0.4.3	noarch	pyh5352f0f_0 (0)	a year ago	554.27 KB
Dependencies: adjusttext >=1.1.1 altair >=5.3.0 anndata >=0.10.5 anyio >=4.3.0 appdirs >=1.4.4 arviz >=0.17.1 astropy-base >=6.1.2 beartype >=0.18.5,<0.20.0 click >=8.1.7 colorlog >=6.7.0 daft >=0.1.2 dataclasses-json >=0.5.7 diffrax >=0.5.0 dill >=0.3.8 diskcache >=5.6.1 duckdb >=1.0.0 dulwich >=0.21.7 einops >=0.7.0 expression >=5.0.2 flax >=0.8.1 flytekit >=1.13.3 fsspec >=2024.3.0 google-api-python-client >=2.138.0 google-cloud-storage >=2.18.0 greenlet >=3.0.3 h5py >=3.9.0 httpx >=0.27.0 hydra-core >=1.3.2 hydra-zen >=0.13.0 ibis-duckdb >=9.2.0 ipywidgets >=8.1.3 jax >=0.4.23,<0.4.27 jaxlib >=0.4.23,<0.4.27 jaxtyping >=0.2.25 jupytext >=1.16.3 leidenalg >=0.9.1 lightning >=2.0.0 mashumaro >=3.13.1 matplotlib-base >=3.9.1 mlflow >=2.13.0 nbconvert >=7.16.4 nbformat >=5.10.4 numpyro >=0.15.0 omegaconf >=2.3.0 pandas >=2.0.0 papermill >=2.6.0 pillow >=10.1.0 plumbum >=1.8.2 polars >=0.20.17 pyarrow >=14.0.2 pyperclip >=1.9.0 pyro-ppl >=1.9.1 python python >=3.11,<3.12 python-dotenv >=1.0.1 pytorch >=2.1.2 pyyaml >=6.0.1 returns >=0.22.0 rich >=13.7.1 rich-click >=1.8.3 scanpy >=1.10.1 scikit-learn <1.2.0 scipy >=1.10.1,<1.14.0 scvelo >=0.3.1,<0.3.3 scvi-tools >=1.1.1,<1.2.0 seaborn >=0.13.2 sparse >=0.15.4,<0.16.0 statsmodels >=0.14.2 sympy >=1.12 termcolor >=2.2.0 tiledb-py >=0.31.1 torchmetrics >=1.2.1 trio >=0.26.0 validators >=0.33.0 vegafusion >=1.6.9 vegafusion-python-embed >=1.6.9 vl-convert-python >=1.6.0 zstandard >=0.23.0 Provenance: Built from: conda-forge/pyrovelocity-feedstock@3a957c0 Not cryptographically verified
pyrovelocity-0.4.2-pyh5352f0f_0.conda	0.4.2	noarch	pyh5352f0f_0 (0)	a year ago	553.54 KB
Dependencies: adjusttext >=1.1.1 altair >=5.3.0 anndata >=0.10.5 anyio >=4.3.0 appdirs >=1.4.4 arviz >=0.17.1 astropy-base >=6.1.2 beartype >=0.18.5,<0.20.0 click >=8.1.7 colorlog >=6.7.0 daft >=0.1.2 dataclasses-json >=0.5.7 diffrax >=0.5.0 dill >=0.3.8 diskcache >=5.6.1 duckdb >=1.0.0 dulwich >=0.21.7 einops >=0.7.0 expression >=5.0.2 flax >=0.8.1 flytekit >=1.13.3 fsspec >=2024.3.0 google-api-python-client >=2.138.0 google-cloud-storage >=2.18.0 greenlet >=3.0.3 h5py >=3.9.0 httpx >=0.27.0 hydra-core >=1.3.2 hydra-zen >=0.13.0 ibis-duckdb >=9.2.0 ipywidgets >=8.1.3 jax >=0.4.23,<0.4.27 jaxlib >=0.4.23,<0.4.27 jaxtyping >=0.2.25 jupytext >=1.16.3 leidenalg >=0.9.1 lightning >=2.0.0 mashumaro >=3.13.1 matplotlib-base >=3.9.1 mlflow >=2.13.0 nbconvert >=7.16.4 nbformat >=5.10.4 numpyro >=0.15.0 omegaconf >=2.3.0 pandas >=2.0.0 papermill >=2.6.0 pillow >=10.1.0 plumbum >=1.8.2 polars >=0.20.17 pyarrow >=14.0.2 pyperclip >=1.9.0 pyro-ppl >=1.9.1 python python >=3.11,<3.12 python-dotenv >=1.0.1 pytorch >=2.1.2 pyyaml >=6.0.1 returns >=0.22.0 rich >=13.7.1 rich-click >=1.8.3 scanpy >=1.10.1 scikit-learn <1.2.0 scipy >=1.10.1,<1.14.0 scvelo >=0.3.1,<0.3.3 scvi-tools >=1.1.1,<1.2.0 seaborn >=0.13.2 sparse >=0.15.4,<0.16.0 statsmodels >=0.14.2 sympy >=1.12 termcolor >=2.2.0 tiledb-py >=0.31.1 torchmetrics >=1.2.1 trio >=0.26.0 validators >=0.33.0 vegafusion >=1.6.9 vegafusion-python-embed >=1.6.9 vl-convert-python >=1.6.0 zstandard >=0.23.0 Provenance: Built from: conda-forge/pyrovelocity-feedstock@d1c5183 Not cryptographically verified
pyrovelocity-0.4.1-pyh267e887_0.conda	0.4.1	noarch	pyh267e887_0 (0)	a year ago	549.37 KB
Dependencies: adjusttext >=1.1.1 altair >=5.3.0 anndata >=0.10.5 anyio >=4.3.0 appdirs >=1.4.4 arviz >=0.17.1 astropy-base >=6.1.2 beartype >=0.18.5,<0.20.0 click >=8.1.7 colorlog >=6.7.0 daft >=0.1.2 dataclasses-json >=0.5.7 diffrax >=0.5.0 dill >=0.3.8 diskcache >=5.6.1 duckdb >=1.0.0 dulwich >=0.21.7 einops >=0.7.0 expression >=5.0.2 flax >=0.8.1 flytekit >=1.13.3 fsspec >=2024.3.0 google-api-python-client >=2.138.0 google-cloud-storage >=2.18.0 greenlet >=3.0.3 h5py >=3.9.0 httpx >=0.27.0 hydra-core >=1.3.2 hydra-zen >=0.13.0 ibis-duckdb >=9.2.0 ipywidgets >=8.1.3 jax >=0.4.23,<0.4.27 jaxlib >=0.4.23,<0.4.27 jaxtyping >=0.2.25 jupytext >=1.16.3 leidenalg >=0.9.1 lightning >=2.0.0 mashumaro >=3.13.1 matplotlib-base >=3.9.1 mlflow >=2.13.0 nbconvert >=7.16.4 nbformat >=5.10.4 numpyro >=0.15.0 omegaconf >=2.3.0 pandas >=2.0.0 papermill >=2.6.0 pillow >=10.1.0 plumbum >=1.8.2 polars >=0.20.17 pyarrow >=14.0.2 pyperclip >=1.9.0 pyro-ppl >=1.9.1 python python >=3.11,<3.12 python-dotenv >=1.0.1 pytorch >=2.1.2 pyyaml >=6.0.1 returns >=0.22.0 rich >=13.7.1 rich-click >=1.8.3 scanpy >=1.10.1 scikit-learn <1.2.0 scipy >=1.10.1,<1.14.0 scvelo >=0.3.1,<0.3.3 scvi-tools >=1.1.1,<1.2.0 seaborn >=0.13.2 sparse >=0.15.4 statsmodels >=0.14.2 sympy >=1.12 termcolor >=2.2.0 tiledb-py >=0.31.1 torchmetrics >=1.2.1 trio >=0.26.0 validators >=0.33.0 vegafusion >=1.6.9 vegafusion-python-embed >=1.6.9 vl-convert-python >=1.6.0 zstandard >=0.23.0 Provenance: Built from: conda-forge/pyrovelocity-feedstock@648f882 Not cryptographically verified
pyrovelocity-0.4.0-pyh267e887_0.conda	0.4.0	noarch	pyh267e887_0 (0)	a year ago	536.35 KB
Dependencies: adjusttext >=1.1.1 altair >=5.3.0 anndata >=0.10.5 anyio >=4.3.0 appdirs >=1.4.4 arviz >=0.17.1 astropy-base >=6.1.2 beartype >=0.18.5,<0.20.0 click >=8.1.7 colorlog >=6.7.0 daft >=0.1.2 dataclasses-json >=0.5.7 diffrax >=0.5.0 dill >=0.3.8 diskcache >=5.6.1 duckdb >=1.0.0 dulwich >=0.21.7 einops >=0.7.0 expression >=5.0.2 flax >=0.8.1 flytekit >=1.13.3 fsspec >=2024.3.0 google-api-python-client >=2.138.0 google-cloud-storage >=2.18.0 greenlet >=3.0.3 h5py >=3.9.0 httpx >=0.27.0 hydra-core >=1.3.2 hydra-zen >=0.13.0 ibis-duckdb >=9.2.0 ipywidgets >=8.1.3 jax >=0.4.23,<0.4.27 jaxlib >=0.4.23,<0.4.27 jaxtyping >=0.2.25 jupytext >=1.16.3 leidenalg >=0.9.1 lightning >=2.0.0 mashumaro >=3.13.1 matplotlib-base >=3.9.1 mlflow >=2.13.0 nbconvert >=7.16.4 nbformat >=5.10.4 numpyro >=0.15.0 omegaconf >=2.3.0 pandas >=2.0.0 papermill >=2.6.0 pillow >=10.1.0 plumbum >=1.8.2 polars >=0.20.17 pyarrow >=14.0.2 pyperclip >=1.9.0 pyro-ppl >=1.9.1 python python >=3.11,<3.12 python-dotenv >=1.0.1 pytorch >=2.1.2 pyyaml >=6.0.1 returns >=0.22.0 rich >=13.7.1 rich-click >=1.8.3 scanpy >=1.10.1 scikit-learn <1.2.0 scipy >=1.10.1,<1.14.0 scvelo >=0.3.1,<0.3.3 scvi-tools >=1.1.1,<1.2.0 seaborn >=0.13.2 sparse >=0.15.4 statsmodels >=0.14.2 sympy >=1.12 termcolor >=2.2.0 tiledb-py >=0.31.1 torchmetrics >=1.2.1 trio >=0.26.0 validators >=0.33.0 vegafusion >=1.6.9 vegafusion-python-embed >=1.6.9 vl-convert-python >=1.6.0 zstandard >=0.23.0 Provenance: Built from: conda-forge/pyrovelocity-feedstock@2f41f03 Not cryptographically verified
pyrovelocity-0.3.0-pyhd8ed1ab_0.conda	0.3.0	noarch	pyhd8ed1ab_0 (0)	2 years ago	168.84 KB
Dependencies: adjusttext >=1.1.1 altair >=5.3.0 anndata >=0.10.5 anyio >=4.3.0 appdirs >=1.4.4 arviz >=0.17.1 astropy >=6.1.2 beartype >=0.18.5 click >=8.1.7 colorlog >=6.7.0 daft >=0.1.2 dataclasses-json >=0.5.7 diffrax >=0.5.0 diskcache >=5.6.1 duckdb >=1.0.0 dulwich >=0.21.7 einops >=0.7.0 expression >=5.0.2 flax >=0.8.1 flytekit >=1.13.3 fsspec >=2024.3.0 google-api-python-client >=2.138.0 google-cloud-storage >=2.18.0 greenlet >=3.0.3 h5py >=3.9.0 httpx >=0.27.0 hydra-core >=1.3.2 hydra-zen >=0.13.0 ibis-duckdb >=9.2.0 ipywidgets >=8.1.3 jax >=0.4.23,<0.4.27 jaxlib >=0.4.23,<0.4.27 jaxtyping >=0.2.25 jupytext >=1.16.3 leidenalg >=0.9.1 lightning >=2.0.0 mashumaro >=3.13.1 matplotlib-base >=3.9.1 mlflow >=2.13.0 nbconvert >=7.16.4 nbformat >=5.10.4 numpyro >=0.15.0 omegaconf >=2.3.0 pandas >=2.0.0 papermill >=2.6.0 plumbum >=1.8.2 polars >=0.20.17 pyarrow >=14.0.2 pyperclip >=1.9.0 pyro-ppl >=1.9.1 python >=3.11,<3.12 python-dotenv >=1.0.1 pytorch >=2.1.2 pyyaml >=6.0.1 returns >=0.22.0 rich >=13.7.1 rich-click >=1.8.3 scanpy >=1.10.1 scikit-learn <1.2.0 scipy >=1.10.1,<1.14.0 scvelo >=0.3.1 scvi-tools >=1.1.1 seaborn >=0.13.2 sparse >=0.15.4 statsmodels >=0.14.2 sympy >=1.12 termcolor >=2.2.0 tiledb-py >=0.31.1 torchmetrics >=1.2.1 trio >=0.26.0 validators >=0.33.0 vegafusion >=1.6.9 vegafusion-python-embed >=1.6.9 vl-convert-python >=1.6.0 zstandard >=0.23.0 Provenance: Built from: conda-forge/pyrovelocity-feedstock@c767abd Not cryptographically verified
pyrovelocity-0.2.0-pyhd8ed1ab_1.conda	0.2.0	noarch	pyhd8ed1ab_1 (1)	2 years ago	144.5 KB
Dependencies: adjusttext >=1.1.1 anndata >=0.10.5 anyio >=4.3.0 appdirs >=1.4.4 arviz >=0.17.1 astropy >=5.2.2 beartype >=0.18.5 click >=8.1.7 colorlog >=6.7.0 daft >=0.1.2 dataclasses-json >=0.5.7 diffrax >=0.5.0 diskcache >=5.6.1 duckdb >=0.10.1 dulwich >=0.21.7 einops >=0.7.0 flax >=0.8.1 flytekit >=1.12.0 google-api-python-client >=2.79.0 google-cloud-storage >=2.14.0 h5py >=3.9.0 httpx >=0.27.0 hydra-core >=1.3.2 hydra-zen >=0.12.1 ibis-duckdb >=8.0.0 ipywidgets >=8.0.0 jax >=0.4.23,<0.4.27 jaxlib >=0.4.23,<0.4.27 jaxtyping >=0.2.25 jupytext >=1.16.0 leidenalg >=0.9.1 lightning >=2.0.0 mashumaro >=3.10 matplotlib-base >=3.8.4 mlflow >=2.13.0 nbconvert >=7.14.0 nbformat >=5.9.2 numpyro >=0.15.0 omegaconf >=2.3.0 pandas >=2.0.0 papermill >=2.4.0 plumbum >=1.8.2 polars >=0.20.17 pyarrow >=14.0.2 pyperclip >=1.8.2 pyro-ppl >=1.9.1 python >=3.10,<3.12 python-dotenv >=1.0.0 pytorch >=2.1.2 pyyaml >=6.0.1 returns >=0.22.0 rich >=12.6.0 rich-click >=1.7.3 scanpy >=1.10.1 scikit-learn <1.2.0 scipy >=1.10.1 scvelo >=0.3.1 scvi-tools >=1.1.1 seaborn >=0.13.2 sympy >=1.12 termcolor >=2.2.0 torchmetrics >=1.2.1 trio >=0.21.0 validators >=0.22.0 zstandard >=0.21.0 Provenance: Built from: conda-forge/pyrovelocity-feedstock@2babbdc Not cryptographically verified