pyrovelocity - conda-forge

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pyrovelocity

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pyrovelocity

v0.4.5

Probabilistic modeling of RNA Velocity with pyro.

Description

Pyrovelocity is a library for probabilistic inference in minimal models approximating gene expression dynamics from multimodal single-cell sequencing data.

docs: https://docs.pyrovelocity.net
source: https://github.com/pinellolab/pyrovelocity

PyPI: https://pypi.org/project/pyrovelocity

Install package

If this channel isn't in your workspace yet, add it first:

pixi workspace channel add --prepend https://prefix.dev/conda-forge

Then install the package:

pixi add pyrovelocity

Install globally (CLI tools)

For packages that expose command-line tools, install globally to use them anywhere:

pixi global install --channel https://prefix.dev/conda-forge pyrovelocity

Download counts

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Version

0.4.5

License

AGPL-3.0-only

Platforms

noarch

Last Published

a year ago

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Variants					Size
pyrovelocity-0.4.5-pyh5352f0f_0.conda	0.4.5	noarch	pyh5352f0f_0 (0)	a year ago	786.79 KB
Dependencies: adjusttext >=1.1.1 altair >=5.3.0 anndata >=0.10.5 anyio >=4.3.0 appdirs >=1.4.4 arviz >=0.17.1 astropy-base >=6.1.2 beartype >=0.18.5,<0.20.0 click >=8.1.7 colorlog >=6.7.0 daft >=0.1.2 dataclasses-json >=0.5.7 diffrax >=0.5.0 dill >=0.3.8 diskcache >=5.6.1 duckdb >=1.0.0 dulwich >=0.21.7 einops >=0.7.0 expression >=5.0.2 flax >=0.8.1 flytekit >=1.13.3 fsspec >=2024.3.0 google-api-python-client >=2.138.0 google-cloud-storage >=2.18.0 greenlet >=3.0.3 h5py >=3.9.0 httpx >=0.27.0 hydra-core >=1.3.2 hydra-zen >=0.13.0 ibis-duckdb >=9.2.0 ipywidgets >=8.1.3 jax >=0.4.23,<0.4.27 jaxlib >=0.4.23,<0.4.27 jaxtyping >=0.2.25 jupytext >=1.16.3 leidenalg >=0.9.1 lightning >=2.0.0 mashumaro >=3.13.1 matplotlib-base >=3.9.1 mlflow >=2.13.0 nbconvert >=7.16.4 nbformat >=5.10.4 numpyro >=0.15.0 omegaconf >=2.3.0 pandas >=2.0.0 papermill >=2.6.0 pillow >=10.1.0 plumbum >=1.8.2 polars >=0.20.17 pyarrow >=14.0.2 pyperclip >=1.9.0 pyro-ppl >=1.9.1 python python >=3.11,<3.12 python-dotenv >=1.0.1 pytorch >=2.1.2 pyyaml >=6.0.1 returns >=0.22.0 rich >=13.7.1 rich-click >=1.8.3 scanpy >=1.10.1 scikit-learn <1.2.0 scipy >=1.10.1,<1.14.0 scvelo >=0.3.1,<0.3.3 scvi-tools >=1.1.1,<1.2.0 seaborn >=0.13.2 sparse >=0.15.4,<0.16.0 statsmodels >=0.14.2 sympy >=1.12 termcolor >=2.2.0 tiledb-py >=0.31.1 torchmetrics >=1.2.1 trio >=0.26.0 validators >=0.33.0 vegafusion >=1.6.9 vegafusion-python-embed >=1.6.9 vl-convert-python >=1.6.0 zstandard >=0.23.0 Provenance: Built from: conda-forge/pyrovelocity-feedstock@048b53d Not cryptographically verified
pyrovelocity-0.4.4-pyh5352f0f_0.conda	0.4.4	noarch	pyh5352f0f_0 (0)	a year ago	556.46 KB
Dependencies: adjusttext >=1.1.1 altair >=5.3.0 anndata >=0.10.5 anyio >=4.3.0 appdirs >=1.4.4 arviz >=0.17.1 astropy-base >=6.1.2 beartype >=0.18.5,<0.20.0 click >=8.1.7 colorlog >=6.7.0 daft >=0.1.2 dataclasses-json >=0.5.7 diffrax >=0.5.0 dill >=0.3.8 diskcache >=5.6.1 duckdb >=1.0.0 dulwich >=0.21.7 einops >=0.7.0 expression >=5.0.2 flax >=0.8.1 flytekit >=1.13.3 fsspec >=2024.3.0 google-api-python-client >=2.138.0 google-cloud-storage >=2.18.0 greenlet >=3.0.3 h5py >=3.9.0 httpx >=0.27.0 hydra-core >=1.3.2 hydra-zen >=0.13.0 ibis-duckdb >=9.2.0 ipywidgets >=8.1.3 jax >=0.4.23,<0.4.27 jaxlib >=0.4.23,<0.4.27 jaxtyping >=0.2.25 jupytext >=1.16.3 leidenalg >=0.9.1 lightning >=2.0.0 mashumaro >=3.13.1 matplotlib-base >=3.9.1 mlflow >=2.13.0 nbconvert >=7.16.4 nbformat >=5.10.4 numpyro >=0.15.0 omegaconf >=2.3.0 pandas >=2.0.0 papermill >=2.6.0 pillow >=10.1.0 plumbum >=1.8.2 polars >=0.20.17 pyarrow >=14.0.2 pyperclip >=1.9.0 pyro-ppl >=1.9.1 python python >=3.11,<3.12 python-dotenv >=1.0.1 pytorch >=2.1.2 pyyaml >=6.0.1 returns >=0.22.0 rich >=13.7.1 rich-click >=1.8.3 scanpy >=1.10.1 scikit-learn <1.2.0 scipy >=1.10.1,<1.14.0 scvelo >=0.3.1,<0.3.3 scvi-tools >=1.1.1,<1.2.0 seaborn >=0.13.2 sparse >=0.15.4,<0.16.0 statsmodels >=0.14.2 sympy >=1.12 termcolor >=2.2.0 tiledb-py >=0.31.1 torchmetrics >=1.2.1 trio >=0.26.0 validators >=0.33.0 vegafusion >=1.6.9 vegafusion-python-embed >=1.6.9 vl-convert-python >=1.6.0 zstandard >=0.23.0 Provenance: Built from: conda-forge/pyrovelocity-feedstock@6690d3a Not cryptographically verified
pyrovelocity-0.4.3-pyh5352f0f_0.conda	0.4.3	noarch	pyh5352f0f_0 (0)	a year ago	554.27 KB
Dependencies: adjusttext >=1.1.1 altair >=5.3.0 anndata >=0.10.5 anyio >=4.3.0 appdirs >=1.4.4 arviz >=0.17.1 astropy-base >=6.1.2 beartype >=0.18.5,<0.20.0 click >=8.1.7 colorlog >=6.7.0 daft >=0.1.2 dataclasses-json >=0.5.7 diffrax >=0.5.0 dill >=0.3.8 diskcache >=5.6.1 duckdb >=1.0.0 dulwich >=0.21.7 einops >=0.7.0 expression >=5.0.2 flax >=0.8.1 flytekit >=1.13.3 fsspec >=2024.3.0 google-api-python-client >=2.138.0 google-cloud-storage >=2.18.0 greenlet >=3.0.3 h5py >=3.9.0 httpx >=0.27.0 hydra-core >=1.3.2 hydra-zen >=0.13.0 ibis-duckdb >=9.2.0 ipywidgets >=8.1.3 jax >=0.4.23,<0.4.27 jaxlib >=0.4.23,<0.4.27 jaxtyping >=0.2.25 jupytext >=1.16.3 leidenalg >=0.9.1 lightning >=2.0.0 mashumaro >=3.13.1 matplotlib-base >=3.9.1 mlflow >=2.13.0 nbconvert >=7.16.4 nbformat >=5.10.4 numpyro >=0.15.0 omegaconf >=2.3.0 pandas >=2.0.0 papermill >=2.6.0 pillow >=10.1.0 plumbum >=1.8.2 polars >=0.20.17 pyarrow >=14.0.2 pyperclip >=1.9.0 pyro-ppl >=1.9.1 python python >=3.11,<3.12 python-dotenv >=1.0.1 pytorch >=2.1.2 pyyaml >=6.0.1 returns >=0.22.0 rich >=13.7.1 rich-click >=1.8.3 scanpy >=1.10.1 scikit-learn <1.2.0 scipy >=1.10.1,<1.14.0 scvelo >=0.3.1,<0.3.3 scvi-tools >=1.1.1,<1.2.0 seaborn >=0.13.2 sparse >=0.15.4,<0.16.0 statsmodels >=0.14.2 sympy >=1.12 termcolor >=2.2.0 tiledb-py >=0.31.1 torchmetrics >=1.2.1 trio >=0.26.0 validators >=0.33.0 vegafusion >=1.6.9 vegafusion-python-embed >=1.6.9 vl-convert-python >=1.6.0 zstandard >=0.23.0 Provenance: Built from: conda-forge/pyrovelocity-feedstock@3a957c0 Not cryptographically verified
pyrovelocity-0.4.2-pyh5352f0f_0.conda	0.4.2	noarch	pyh5352f0f_0 (0)	a year ago	553.54 KB
Dependencies: adjusttext >=1.1.1 altair >=5.3.0 anndata >=0.10.5 anyio >=4.3.0 appdirs >=1.4.4 arviz >=0.17.1 astropy-base >=6.1.2 beartype >=0.18.5,<0.20.0 click >=8.1.7 colorlog >=6.7.0 daft >=0.1.2 dataclasses-json >=0.5.7 diffrax >=0.5.0 dill >=0.3.8 diskcache >=5.6.1 duckdb >=1.0.0 dulwich >=0.21.7 einops >=0.7.0 expression >=5.0.2 flax >=0.8.1 flytekit >=1.13.3 fsspec >=2024.3.0 google-api-python-client >=2.138.0 google-cloud-storage >=2.18.0 greenlet >=3.0.3 h5py >=3.9.0 httpx >=0.27.0 hydra-core >=1.3.2 hydra-zen >=0.13.0 ibis-duckdb >=9.2.0 ipywidgets >=8.1.3 jax >=0.4.23,<0.4.27 jaxlib >=0.4.23,<0.4.27 jaxtyping >=0.2.25 jupytext >=1.16.3 leidenalg >=0.9.1 lightning >=2.0.0 mashumaro >=3.13.1 matplotlib-base >=3.9.1 mlflow >=2.13.0 nbconvert >=7.16.4 nbformat >=5.10.4 numpyro >=0.15.0 omegaconf >=2.3.0 pandas >=2.0.0 papermill >=2.6.0 pillow >=10.1.0 plumbum >=1.8.2 polars >=0.20.17 pyarrow >=14.0.2 pyperclip >=1.9.0 pyro-ppl >=1.9.1 python python >=3.11,<3.12 python-dotenv >=1.0.1 pytorch >=2.1.2 pyyaml >=6.0.1 returns >=0.22.0 rich >=13.7.1 rich-click >=1.8.3 scanpy >=1.10.1 scikit-learn <1.2.0 scipy >=1.10.1,<1.14.0 scvelo >=0.3.1,<0.3.3 scvi-tools >=1.1.1,<1.2.0 seaborn >=0.13.2 sparse >=0.15.4,<0.16.0 statsmodels >=0.14.2 sympy >=1.12 termcolor >=2.2.0 tiledb-py >=0.31.1 torchmetrics >=1.2.1 trio >=0.26.0 validators >=0.33.0 vegafusion >=1.6.9 vegafusion-python-embed >=1.6.9 vl-convert-python >=1.6.0 zstandard >=0.23.0 Provenance: Built from: conda-forge/pyrovelocity-feedstock@d1c5183 Not cryptographically verified
pyrovelocity-0.4.1-pyh267e887_0.conda	0.4.1	noarch	pyh267e887_0 (0)	a year ago	549.37 KB
Dependencies: adjusttext >=1.1.1 altair >=5.3.0 anndata >=0.10.5 anyio >=4.3.0 appdirs >=1.4.4 arviz >=0.17.1 astropy-base >=6.1.2 beartype >=0.18.5,<0.20.0 click >=8.1.7 colorlog >=6.7.0 daft >=0.1.2 dataclasses-json >=0.5.7 diffrax >=0.5.0 dill >=0.3.8 diskcache >=5.6.1 duckdb >=1.0.0 dulwich >=0.21.7 einops >=0.7.0 expression >=5.0.2 flax >=0.8.1 flytekit >=1.13.3 fsspec >=2024.3.0 google-api-python-client >=2.138.0 google-cloud-storage >=2.18.0 greenlet >=3.0.3 h5py >=3.9.0 httpx >=0.27.0 hydra-core >=1.3.2 hydra-zen >=0.13.0 ibis-duckdb >=9.2.0 ipywidgets >=8.1.3 jax >=0.4.23,<0.4.27 jaxlib >=0.4.23,<0.4.27 jaxtyping >=0.2.25 jupytext >=1.16.3 leidenalg >=0.9.1 lightning >=2.0.0 mashumaro >=3.13.1 matplotlib-base >=3.9.1 mlflow >=2.13.0 nbconvert >=7.16.4 nbformat >=5.10.4 numpyro >=0.15.0 omegaconf >=2.3.0 pandas >=2.0.0 papermill >=2.6.0 pillow >=10.1.0 plumbum >=1.8.2 polars >=0.20.17 pyarrow >=14.0.2 pyperclip >=1.9.0 pyro-ppl >=1.9.1 python python >=3.11,<3.12 python-dotenv >=1.0.1 pytorch >=2.1.2 pyyaml >=6.0.1 returns >=0.22.0 rich >=13.7.1 rich-click >=1.8.3 scanpy >=1.10.1 scikit-learn <1.2.0 scipy >=1.10.1,<1.14.0 scvelo >=0.3.1,<0.3.3 scvi-tools >=1.1.1,<1.2.0 seaborn >=0.13.2 sparse >=0.15.4 statsmodels >=0.14.2 sympy >=1.12 termcolor >=2.2.0 tiledb-py >=0.31.1 torchmetrics >=1.2.1 trio >=0.26.0 validators >=0.33.0 vegafusion >=1.6.9 vegafusion-python-embed >=1.6.9 vl-convert-python >=1.6.0 zstandard >=0.23.0 Provenance: Built from: conda-forge/pyrovelocity-feedstock@648f882 Not cryptographically verified
pyrovelocity-0.4.0-pyh267e887_0.conda	0.4.0	noarch	pyh267e887_0 (0)	2 years ago	536.35 KB
Dependencies: adjusttext >=1.1.1 altair >=5.3.0 anndata >=0.10.5 anyio >=4.3.0 appdirs >=1.4.4 arviz >=0.17.1 astropy-base >=6.1.2 beartype >=0.18.5,<0.20.0 click >=8.1.7 colorlog >=6.7.0 daft >=0.1.2 dataclasses-json >=0.5.7 diffrax >=0.5.0 dill >=0.3.8 diskcache >=5.6.1 duckdb >=1.0.0 dulwich >=0.21.7 einops >=0.7.0 expression >=5.0.2 flax >=0.8.1 flytekit >=1.13.3 fsspec >=2024.3.0 google-api-python-client >=2.138.0 google-cloud-storage >=2.18.0 greenlet >=3.0.3 h5py >=3.9.0 httpx >=0.27.0 hydra-core >=1.3.2 hydra-zen >=0.13.0 ibis-duckdb >=9.2.0 ipywidgets >=8.1.3 jax >=0.4.23,<0.4.27 jaxlib >=0.4.23,<0.4.27 jaxtyping >=0.2.25 jupytext >=1.16.3 leidenalg >=0.9.1 lightning >=2.0.0 mashumaro >=3.13.1 matplotlib-base >=3.9.1 mlflow >=2.13.0 nbconvert >=7.16.4 nbformat >=5.10.4 numpyro >=0.15.0 omegaconf >=2.3.0 pandas >=2.0.0 papermill >=2.6.0 pillow >=10.1.0 plumbum >=1.8.2 polars >=0.20.17 pyarrow >=14.0.2 pyperclip >=1.9.0 pyro-ppl >=1.9.1 python python >=3.11,<3.12 python-dotenv >=1.0.1 pytorch >=2.1.2 pyyaml >=6.0.1 returns >=0.22.0 rich >=13.7.1 rich-click >=1.8.3 scanpy >=1.10.1 scikit-learn <1.2.0 scipy >=1.10.1,<1.14.0 scvelo >=0.3.1,<0.3.3 scvi-tools >=1.1.1,<1.2.0 seaborn >=0.13.2 sparse >=0.15.4 statsmodels >=0.14.2 sympy >=1.12 termcolor >=2.2.0 tiledb-py >=0.31.1 torchmetrics >=1.2.1 trio >=0.26.0 validators >=0.33.0 vegafusion >=1.6.9 vegafusion-python-embed >=1.6.9 vl-convert-python >=1.6.0 zstandard >=0.23.0 Provenance: Built from: conda-forge/pyrovelocity-feedstock@2f41f03 Not cryptographically verified
pyrovelocity-0.3.0-pyhd8ed1ab_0.conda	0.3.0	noarch	pyhd8ed1ab_0 (0)	2 years ago	168.84 KB
Dependencies: adjusttext >=1.1.1 altair >=5.3.0 anndata >=0.10.5 anyio >=4.3.0 appdirs >=1.4.4 arviz >=0.17.1 astropy >=6.1.2 beartype >=0.18.5 click >=8.1.7 colorlog >=6.7.0 daft >=0.1.2 dataclasses-json >=0.5.7 diffrax >=0.5.0 diskcache >=5.6.1 duckdb >=1.0.0 dulwich >=0.21.7 einops >=0.7.0 expression >=5.0.2 flax >=0.8.1 flytekit >=1.13.3 fsspec >=2024.3.0 google-api-python-client >=2.138.0 google-cloud-storage >=2.18.0 greenlet >=3.0.3 h5py >=3.9.0 httpx >=0.27.0 hydra-core >=1.3.2 hydra-zen >=0.13.0 ibis-duckdb >=9.2.0 ipywidgets >=8.1.3 jax >=0.4.23,<0.4.27 jaxlib >=0.4.23,<0.4.27 jaxtyping >=0.2.25 jupytext >=1.16.3 leidenalg >=0.9.1 lightning >=2.0.0 mashumaro >=3.13.1 matplotlib-base >=3.9.1 mlflow >=2.13.0 nbconvert >=7.16.4 nbformat >=5.10.4 numpyro >=0.15.0 omegaconf >=2.3.0 pandas >=2.0.0 papermill >=2.6.0 plumbum >=1.8.2 polars >=0.20.17 pyarrow >=14.0.2 pyperclip >=1.9.0 pyro-ppl >=1.9.1 python >=3.11,<3.12 python-dotenv >=1.0.1 pytorch >=2.1.2 pyyaml >=6.0.1 returns >=0.22.0 rich >=13.7.1 rich-click >=1.8.3 scanpy >=1.10.1 scikit-learn <1.2.0 scipy >=1.10.1,<1.14.0 scvelo >=0.3.1 scvi-tools >=1.1.1 seaborn >=0.13.2 sparse >=0.15.4 statsmodels >=0.14.2 sympy >=1.12 termcolor >=2.2.0 tiledb-py >=0.31.1 torchmetrics >=1.2.1 trio >=0.26.0 validators >=0.33.0 vegafusion >=1.6.9 vegafusion-python-embed >=1.6.9 vl-convert-python >=1.6.0 zstandard >=0.23.0 Provenance: Built from: conda-forge/pyrovelocity-feedstock@c767abd Not cryptographically verified
pyrovelocity-0.2.0-pyhd8ed1ab_1.conda	0.2.0	noarch	pyhd8ed1ab_1 (1)	2 years ago	144.5 KB
Dependencies: adjusttext >=1.1.1 anndata >=0.10.5 anyio >=4.3.0 appdirs >=1.4.4 arviz >=0.17.1 astropy >=5.2.2 beartype >=0.18.5 click >=8.1.7 colorlog >=6.7.0 daft >=0.1.2 dataclasses-json >=0.5.7 diffrax >=0.5.0 diskcache >=5.6.1 duckdb >=0.10.1 dulwich >=0.21.7 einops >=0.7.0 flax >=0.8.1 flytekit >=1.12.0 google-api-python-client >=2.79.0 google-cloud-storage >=2.14.0 h5py >=3.9.0 httpx >=0.27.0 hydra-core >=1.3.2 hydra-zen >=0.12.1 ibis-duckdb >=8.0.0 ipywidgets >=8.0.0 jax >=0.4.23,<0.4.27 jaxlib >=0.4.23,<0.4.27 jaxtyping >=0.2.25 jupytext >=1.16.0 leidenalg >=0.9.1 lightning >=2.0.0 mashumaro >=3.10 matplotlib-base >=3.8.4 mlflow >=2.13.0 nbconvert >=7.14.0 nbformat >=5.9.2 numpyro >=0.15.0 omegaconf >=2.3.0 pandas >=2.0.0 papermill >=2.4.0 plumbum >=1.8.2 polars >=0.20.17 pyarrow >=14.0.2 pyperclip >=1.8.2 pyro-ppl >=1.9.1 python >=3.10,<3.12 python-dotenv >=1.0.0 pytorch >=2.1.2 pyyaml >=6.0.1 returns >=0.22.0 rich >=12.6.0 rich-click >=1.7.3 scanpy >=1.10.1 scikit-learn <1.2.0 scipy >=1.10.1 scvelo >=0.3.1 scvi-tools >=1.1.1 seaborn >=0.13.2 sympy >=1.12 termcolor >=2.2.0 torchmetrics >=1.2.1 trio >=0.21.0 validators >=0.22.0 zstandard >=0.21.0 Provenance: Built from: conda-forge/pyrovelocity-feedstock@2babbdc Not cryptographically verified