coverm - bioconda

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coverm

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coverm

v0.7.0

CoverM aims to be a configurable, easy to use and fast DNA read coverage and relative abundance calculator focused on metagenomics applications.

Install with Pixi

pixi add coverm

Install with conda

conda install -c https://prefix.dev/bioconda coverm

Description

CoverM aims to be a configurable, easy to use and fast DNA read coverage and relative abundance calculator focused on metagenomics application.

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Version

0.7.0

License

GPL-3.0-or-later

GPL3

Platforms

linux-64

linux-aarch64

osx-64

osx-arm64

Last Published

10 months ago

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Variants			Build	Created	Size
coverm-0.7.0-h8437899_4.tar.bz2	0.7.0	osx-64	h8437899_4 (4)	10 months ago	2.08 MB
Dependencies: bwa >=0.7.17 fastani >=1.31 gsl >=2.7,<2.8.0a0 libcxx >=18 libzlib >=1.3.1,<2.0a0 minimap2 >=2.28 openblas python-dashing samtools >=1.9 starcode strobealign >=0.11.0 Constraints: __osx >=10.13 Run exports: Weak: coverm >=0.7.0,<0.8.0a0
coverm-0.7.0-hcb7b614_4.tar.bz2	0.7.0	linux-64	hcb7b614_4 (4)	10 months ago	2.17 MB
Dependencies: bwa >=0.7.17 fastani >=1.31 gsl >=2.7,<2.8.0a0 libgcc >=13 libstdcxx >=13 libzlib >=1.3.1,<2.0a0 minimap2 >=2.28 openblas python-dashing samtools >=1.9 starcode strobealign >=0.11.0 Constraints: __glibc >=2.17 Run exports: Weak: coverm >=0.7.0,<0.8.0a0
coverm-0.7.0-h3ad02e1_4.tar.bz2	0.7.0	linux-aarch64	h3ad02e1_4 (4)	10 months ago	2.14 MB
Dependencies: bwa >=0.7.17 fastani >=1.31 gsl >=2.7,<2.8.0a0 libgcc >=13 libstdcxx >=13 libzlib >=1.3.1,<2.0a0 minimap2 >=2.28 openblas python-dashing samtools >=1.9 starcode strobealign >=0.11.0 Constraints: __glibc >=2.17 Run exports: Weak: coverm >=0.7.0,<0.8.0a0
coverm-0.7.0-hbf122a4_4.tar.bz2	0.7.0	osx-arm64	hbf122a4_4 (4)	10 months ago	1.95 MB
Dependencies: bwa >=0.7.17 fastani >=1.31 gsl >=2.7,<2.8.0a0 libcxx >=18 libzlib >=1.3.1,<2.0a0 minimap2 >=2.28 openblas python-dashing samtools >=1.9 starcode strobealign >=0.11.0 Constraints: __osx >=11.0 Run exports: Weak: coverm >=0.7.0,<0.8.0a0
coverm-0.7.0-h2edac79_3.tar.bz2	0.7.0	linux-64	h2edac79_3 (3)	10 months ago	2.18 MB
Dependencies: bwa >=0.7.17 fastani >=1.31 gsl >=2.7,<2.8.0a0 libgcc >=13 libstdcxx >=13 libzlib >=1.3.1,<2.0a0 minimap2 >=2.28 openblas python-dashing samtools >=1.9 starcode strobealign >=0.11.0 zlib Constraints: __glibc >=2.17 Run exports: Weak: coverm >=0.7.0,<0.8.0a0
coverm-0.7.0-hd98e439_3.tar.bz2	0.7.0	linux-aarch64	hd98e439_3 (3)	10 months ago	2.14 MB
Dependencies: bwa >=0.7.17 fastani >=1.31 gsl >=2.7,<2.8.0a0 libgcc >=13 libstdcxx >=13 libzlib >=1.3.1,<2.0a0 minimap2 >=2.28 openblas python-dashing samtools >=1.9 starcode strobealign >=0.11.0 zlib Constraints: __glibc >=2.17 Run exports: Weak: coverm >=0.7.0,<0.8.0a0
coverm-0.7.0-hb4818e0_2.tar.bz2	0.7.0	linux-64	hb4818e0_2 (2)	a year ago	2.15 MB
Dependencies: bwa >=0.7.17 dashing >=0.4.0 fastani >=1.31 gsl >=2.7,<2.8.0a0 libgcc >=13 libstdcxx >=13 libzlib >=1.3.1,<2.0a0 minimap2 >=2.24 openblas samtools >=1.9 starcode strobealign >=0.11.0 zlib Constraints: __glibc >=2.17 Run exports: Weak: coverm >=0.7.0,<0.8.0a0
coverm-0.7.0-h07ea13f_1.tar.bz2	0.7.0	linux-64	h07ea13f_1 (1)	2 years ago	2.16 MB
Dependencies: bwa >=0.7.17 dashing >=0.4.0 fastani >=1.31 gsl >=2.7,<2.8.0a0 libgcc-ng >=12 libstdcxx-ng >=12 libzlib >=1.2.13,<2.0a0 minimap2 >=2.24 openblas samtools >=1.9 starcode strobealign >=0.11.0 zlib Run exports: Weak: coverm >=0.7.0,<0.8.0a0
coverm-0.7.0-h07ea13f_0.tar.bz2	0.7.0	linux-64	h07ea13f_0 (0)	2 years ago	2.14 MB
Dependencies: bwa >=0.7.17 dashing >=0.4.0 fastani >=1.31 gsl >=2.7,<2.8.0a0 libgcc-ng >=12 libstdcxx-ng >=12 libzlib >=1.2.13,<1.3.0a0 minimap2 >=2.24 openblas samtools >=1.9 starcode zlib Run exports: Weak: coverm >=0.7.0,<0.8.0a0
coverm-0.6.1-h07ea13f_6.tar.bz2	0.6.1	linux-64	h07ea13f_6 (6)	3 years ago	3.73 MB
Dependencies: bwa >=0.7.17 dashing >=0.4.0 fastani >=1.31 gsl >=2.7,<2.8.0a0 libgcc-ng >=12 libstdcxx-ng >=12 libzlib >=1.2.13,<1.3.0a0 minimap2 >=2.24 openblas samtools >=1.9 starcode zlib