ariba - bioconda

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ariba

v2.14.7

ARIBA: Antibiotic Resistance Identification By Assembly.

Description

ariba package does not contain a description

Install package

If the required channels aren't in your workspace yet, add them first:

pixi workspace channel add --prepend https://prefix.dev/conda-forge https://prefix.dev/bioconda

Then install the package:

pixi add ariba

Install globally (CLI tools)

For packages that expose command-line tools, install globally to use them anywhere:

pixi global install --channel https://prefix.dev/conda-forge --channel https://prefix.dev/bioconda ariba

Download counts

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Version

2.14.7

License

GPL-3.0-or-later

GNU General Public License v3

(

GPL-3.0

)

Platforms

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entries per page

Variants					Size
ariba-2.14.7-py312hdcc493e_0.conda	2.14.7	linux-64	py312hdcc493e_0 (0)	a year ago	2.25 MB
Dependencies: bcftools >=1.2 beautifulsoup4 >=4.1.0 biopython bowtie2 cd-hit >=4.6.5 dendropy >=4.2.0 libgcc >=13 libstdcxx >=13 libzlib >=1.3.1,<2.0a0 matplotlib-base >=3.1.0 mummer >=3.23 pyfastaq >=3.12.0 pymummer >=0.11.0 pysam >=0.21.0 python >=3.12,<3.13.0a0 python_abi 3.12.* *_cp312 samtools >=1.2 setuptools spades >=3.5.0 wget Run exports: Weak: ariba >=2.14.7,<3.0a0
ariba-2.14.7-py312h13dbd8f_0.conda	2.14.7	osx-64	py312h13dbd8f_0 (0)	a year ago	2.18 MB
Dependencies: bcftools >=1.2 beautifulsoup4 >=4.1.0 biopython bowtie2 cd-hit >=4.6.5 dendropy >=4.2.0 libcxx >=18 libzlib >=1.3.1,<2.0a0 matplotlib-base >=3.1.0 mummer >=3.23 pyfastaq >=3.12.0 pymummer >=0.11.0 pysam >=0.21.0 python >=3.12,<3.13.0a0 python_abi 3.12.* *_cp312 samtools >=1.2 setuptools spades >=3.5.0 wget Run exports: Weak: ariba >=2.14.7,<3.0a0
ariba-2.14.7-py39h2dcb759_0.conda	2.14.7	osx-64	py39h2dcb759_0 (0)	a year ago	2 MB
Dependencies: bcftools >=1.2 beautifulsoup4 >=4.1.0 biopython bowtie2 cd-hit >=4.6.5 dendropy >=4.2.0 libcxx >=18 libzlib >=1.3.1,<2.0a0 matplotlib-base >=3.1.0 mummer >=3.23 pyfastaq >=3.12.0 pymummer >=0.11.0 pysam >=0.21.0 python >=3.9,<3.10.0a0 python_abi 3.9.* *_cp39 samtools >=1.2 setuptools spades >=3.5.0 wget Run exports: Weak: ariba >=2.14.7,<3.0a0
ariba-2.14.7-py310h5140242_0.conda	2.14.7	linux-64	py310h5140242_0 (0)	a year ago	2.07 MB
Dependencies: bcftools >=1.2 beautifulsoup4 >=4.1.0 biopython bowtie2 cd-hit >=4.6.5 dendropy >=4.2.0 libgcc >=13 libstdcxx >=13 libzlib >=1.3.1,<2.0a0 matplotlib-base >=3.1.0 mummer >=3.23 pyfastaq >=3.12.0 pymummer >=0.11.0 pysam >=0.21.0 python >=3.10,<3.11.0a0 python_abi 3.10.* *_cp310 samtools >=1.2 setuptools spades >=3.5.0 wget Run exports: Weak: ariba >=2.14.7,<3.0a0
ariba-2.14.7-py310hd9fea4d_0.conda	2.14.7	osx-64	py310hd9fea4d_0 (0)	a year ago	2 MB
Dependencies: bcftools >=1.2 beautifulsoup4 >=4.1.0 biopython bowtie2 cd-hit >=4.6.5 dendropy >=4.2.0 libcxx >=18 libzlib >=1.3.1,<2.0a0 matplotlib-base >=3.1.0 mummer >=3.23 pyfastaq >=3.12.0 pymummer >=0.11.0 pysam >=0.21.0 python >=3.10,<3.11.0a0 python_abi 3.10.* *_cp310 samtools >=1.2 setuptools spades >=3.5.0 wget Run exports: Weak: ariba >=2.14.7,<3.0a0
ariba-2.14.7-py39h746d604_0.conda	2.14.7	linux-64	py39h746d604_0 (0)	a year ago	2.07 MB
Dependencies: bcftools >=1.2 beautifulsoup4 >=4.1.0 biopython bowtie2 cd-hit >=4.6.5 dendropy >=4.2.0 libgcc >=13 libstdcxx >=13 libzlib >=1.3.1,<2.0a0 matplotlib-base >=3.1.0 mummer >=3.23 pyfastaq >=3.12.0 pymummer >=0.11.0 pysam >=0.21.0 python >=3.9,<3.10.0a0 python_abi 3.9.* *_cp39 samtools >=1.2 setuptools spades >=3.5.0 wget Run exports: Weak: ariba >=2.14.7,<3.0a0
ariba-2.14.7-py311hff84f65_0.conda	2.14.7	osx-64	py311hff84f65_0 (0)	a year ago	2.25 MB
Dependencies: bcftools >=1.2 beautifulsoup4 >=4.1.0 biopython bowtie2 cd-hit >=4.6.5 dendropy >=4.2.0 libcxx >=18 libzlib >=1.3.1,<2.0a0 matplotlib-base >=3.1.0 mummer >=3.23 pyfastaq >=3.12.0 pymummer >=0.11.0 pysam >=0.21.0 python >=3.11,<3.12.0a0 python_abi 3.11.* *_cp311 samtools >=1.2 setuptools spades >=3.5.0 wget Run exports: Weak: ariba >=2.14.7,<3.0a0
ariba-2.14.7-py311hc84137b_0.conda	2.14.7	linux-64	py311hc84137b_0 (0)	a year ago	2.19 MB
Dependencies: bcftools >=1.2 beautifulsoup4 >=4.1.0 biopython bowtie2 cd-hit >=4.6.5 dendropy >=4.2.0 libgcc >=13 libstdcxx >=13 libzlib >=1.3.1,<2.0a0 matplotlib-base >=3.1.0 mummer >=3.23 pyfastaq >=3.12.0 pymummer >=0.11.0 pysam >=0.21.0 python >=3.11,<3.12.0a0 python_abi 3.11.* *_cp311 samtools >=1.2 setuptools spades >=3.5.0 wget Run exports: Weak: ariba >=2.14.7,<3.0a0
ariba-2.14.6-py38h40d3509_6.tar.bz2	2.14.6	linux-64	py38h40d3509_6 (6)	2 years ago	2.63 MB
Dependencies: bcftools >=1.2,<=1.14 beautifulsoup4 >=4.1.0 biopython bowtie2 <2.4.0 cd-hit >=4.6.5 dendropy >=4.2.0 libgcc-ng >=12 libstdcxx-ng >=12 libzlib >=1.2.13,<2.0a0 matplotlib-base >=3.1.0 mummer >=3.23 pyfastaq >=3.12.0 pymummer >=0.11.0 pysam >=0.15.3,<=0.18.0 python >=3.8,<3.9.0a0 python_abi 3.8.* *_cp38 samtools >=1.2 spades >=3.5.0 wget zlib
ariba-2.14.6-py39heaaa4ec_6.tar.bz2	2.14.6	linux-64	py39heaaa4ec_6 (6)	2 years ago	2.63 MB
Dependencies: bcftools >=1.2,<=1.14 beautifulsoup4 >=4.1.0 biopython bowtie2 <2.4.0 cd-hit >=4.6.5 dendropy >=4.2.0 libgcc-ng >=12 libstdcxx-ng >=12 libzlib >=1.2.13,<2.0a0 matplotlib-base >=3.1.0 mummer >=3.23 pyfastaq >=3.12.0 pymummer >=0.11.0 pysam >=0.15.3,<=0.18.0 python >=3.9,<3.10.0a0 python_abi 3.9.* *_cp39 samtools >=1.2 spades >=3.5.0 wget zlib